Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
KDM2B

Cell type

Cell type Class
Blood
Cell type
Acute myeloid leukemia
NA
NA

Attributes by original data submitter

Sample

source_name
mobPBSC
tissue
AML
antibody target
KDM2B
company
Abcam
catalogue number
ab137547
reference genome
HG19

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin was sonicated and used for ChIP seq using specific antibodies (avialable on suplementry table). ChIP seq libraries were preapared according to Illumina's standard protocol.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
41541552
Reads aligned (%)
92.7
Duplicates removed (%)
85.0
Number of peaks
11540 (qval < 1E-05)

hg19

Number of total reads
41541552
Reads aligned (%)
92.0
Duplicates removed (%)
86.0
Number of peaks
11413 (qval < 1E-05)

Base call quality data from DBCLS SRA